PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21820_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 493aa    MW: 55265.7 Da    PI: 8.3334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21820_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-064044201127
                     GTS--TTTTT-SS-SSS CS
         zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                     r+G+C++Gd+Ck+ H++
  Neem_21820_f_1 404 RMGFCPFGDSCKYFHPK 420
                     89*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.201.5E-2368148No hitNo description
CDDcd14137069361No hitNo description
SuperFamilySSF561121.48E-8973387IPR011009Protein kinase-like domain
PfamPF000693.7E-6574358IPR000719Protein kinase domain
SMARTSM002206.2E-9074358IPR000719Protein kinase domain
PROSITE profilePS5001144.21674358IPR000719Protein kinase domain
PROSITE patternPS00107080104IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.101.6E-61149359No hitNo description
PROSITE patternPS001080195207IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS501039.807403421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASVGVAPTS CMRESSGHTV AGVDKLPEEM NDMKIRDDKE MEATVVDGNG TETGHIIVTT  60
IGGRNGQPKQ TISYMAERIV GQGSFGVVFQ AKCLETGETV AIKKVLQDKR YKNRELQTMR  120
LLDHPNVVSL KHCFFSTTEK DELYLNLVLE YVPETVHRVI KHFNKLNQRM PMIYVKLYAY  180
QIFRALSYIH RSIGVCHRDI KPQNLLVNPH THQVKLCDFG SAKVLVKGEP NISYICSRYY  240
RAPELIFGAT EYTTAIDIWS AGCVVAELLL GKPLFPGDSG VDQLVEIIKV LGTPTREEIK  300
CMNPNYTEFK FPQIKAHPWH KIFPKRMPPE AVDLVSRLLQ YSPNLRCSAL DALIHPFFDE  360
LRDPNTRLPN GRFLPPLFNF KSHENAIFKA SNTSEQKLYG TIFRMGFCPF GDSCKYFHPK  420
NTQNAGAPGF VATGFIDTAQ SSSVDPRIYL VGGTSLPGDM VRDSMGMSWG NLPPSLKPPP  480
EGGYPPLPFV DWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1i09_A1e-1692738420366GLYCOGEN SYNTHASE KINASE-3 BETA
1i09_B1e-1692738420366GLYCOGEN SYNTHASE KINASE-3 BETA
1j1b_A1e-1692738420366Glycogen synthase kinase-3 beta
1j1b_B1e-1692738420366Glycogen synthase kinase-3 beta
1j1c_A1e-1692738420366Glycogen synthase kinase-3 beta
1j1c_B1e-1692738420366Glycogen synthase kinase-3 beta
1q5k_A1e-1702738414360Glycogen synthase kinase-3 beta
1q5k_B1e-1702738414360Glycogen synthase kinase-3 beta
2jld_A1e-1692738420366GLYCOGEN SYNTHASE KINASE-3 BETA
2jld_B1e-1692738420366GLYCOGEN SYNTHASE KINASE-3 BETA
3i4b_A1e-1702738414360Glycogen synthase kinase-3 beta
3i4b_B1e-1702738414360Glycogen synthase kinase-3 beta
3l1s_A1e-1702738414360Glycogen synthase kinase-3 beta
3l1s_B1e-1702738414360Glycogen synthase kinase-3 beta
3m1s_A1e-1692738420366Glycogen synthase kinase-3 beta
3m1s_B1e-1692738420366Glycogen synthase kinase-3 beta
3pup_A1e-1692738420366Glycogen synthase kinase-3 beta
3pup_B1e-1692738420366Glycogen synthase kinase-3 beta
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428242.10.0hypothetical protein CICLE_v10013624mg
SwissprotP432880.0KSG1_ARATH; Shaggy-related protein kinase alpha
TrEMBLV4SLD60.0V4SLD6_9R
STRINGPGSC0003DMT4000070880.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.23e-18WRKY family protein